Package: pam 1.0.2
pam: Fast and Efficient Processing of PAM Data
Processing Chlorophyll Fluorescence & P700 Absorbance data generated by WALZ hardware. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Authors:
pam_1.0.2.tar.gz
pam_1.0.2.zip(r-4.5)pam_1.0.2.zip(r-4.4)pam_1.0.2.zip(r-4.3)
pam_1.0.2.tgz(r-4.5-any)pam_1.0.2.tgz(r-4.4-any)pam_1.0.2.tgz(r-4.3-any)
pam_1.0.2.tar.gz(r-4.5-noble)pam_1.0.2.tar.gz(r-4.4-noble)
pam_1.0.2.tgz(r-4.4-emscripten)pam_1.0.2.tgz(r-4.3-emscripten)
pam.pdf |pam.html✨
pam/json (API)
| # Install 'pam' in R: |
| install.packages('pam', repos = c('https://julienboehm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biotoolbox/pam/issues
Last updated 21 days agofrom:ebae883d08. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 25 2025 |
| R-4.5-win | OK | Feb 25 2025 |
| R-4.5-mac | OK | Feb 25 2025 |
| R-4.5-linux | OK | Feb 25 2025 |
| R-4.4-win | OK | Feb 25 2025 |
| R-4.4-mac | OK | Feb 25 2025 |
| R-4.3-win | OK | Feb 25 2025 |
| R-4.3-mac | OK | Feb 25 2025 |
Exports:combo_plot_controlcompare_regression_models_ETR_Icompare_regression_models_ETR_IIeilers_peeters_default_start_value_aeilers_peeters_default_start_value_beilers_peeters_default_start_value_ceilers_peeters_generate_regression_ETR_Ieilers_peeters_generate_regression_ETR_IIeilers_peeters_modifiedplatt_default_start_value_alphaplatt_default_start_value_betaplatt_default_start_value_psplatt_generate_regression_ETR_Iplatt_generate_regression_ETR_IIplatt_modifiedplot_controlread_dual_pam_datavollenweider_default_start_value_avollenweider_default_start_value_alphavollenweider_default_start_value_nvollenweider_default_start_value_pmaxvollenweider_generate_regression_ETR_Ivollenweider_generate_regression_ETR_IIvollenweider_modifiedwalsby_default_start_value_alphawalsby_default_start_value_betawalsby_default_start_value_etr_maxwalsby_generate_regression_ETR_Iwalsby_generate_regression_ETR_IIwalsby_modifiedwrite_model_result_csv
Dependencies:clicolorspacecowplotdata.tabledplyrfansifarvergenericsggplot2ggthemesgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Combined ETR Plot and Summary Table | combo_plot_control |
| Compare Regression Models for ETR I | compare_regression_models_ETR_I |
| Compare Regression Models for ETR II | compare_regression_models_ETR_II |
| Default start value | eilers_peeters_default_start_value_a |
| Default start value | eilers_peeters_default_start_value_b |
| Default start value | eilers_peeters_default_start_value_c |
| Eilers-Peeters Regression for ETR I | eilers_peeters_generate_regression_ETR_I |
| Eilers-Peeters Regression for ETR II | eilers_peeters_generate_regression_ETR_II |
| Eilers & Peeters Model Modification | eilers_peeters_modified |
| Default start value | platt_default_start_value_alpha |
| Default start value | platt_default_start_value_beta |
| Default start value | platt_default_start_value_ps |
| Platt Regression for ETR I | platt_generate_regression_ETR_I |
| Platt Regression for ETR II | platt_generate_regression_ETR_II |
| Platt Model Modification | platt_modified |
| Plot Control | plot_control |
| Read and Process DualPAM Data | read_dual_pam_data |
| Default start value | vollenweider_default_start_value_a |
| Default start value | vollenweider_default_start_value_alpha |
| Default start value | vollenweider_default_start_value_n |
| Default start value | vollenweider_default_start_value_pmax |
| Vollenweider Regression for ETR I | vollenweider_generate_regression_ETR_I |
| Vollenweider Regression for ETR II | vollenweider_generate_regression_ETR_II |
| Vollenweider Model Modification | vollenweider_modified |
| Default start value | walsby_default_start_value_alpha |
| Default start value | walsby_default_start_value_beta |
| Default start value | walsby_default_start_value_etr_max |
| Walsby Regression for ETR I | walsby_generate_regression_ETR_I |
| Walsby Regression for ETR II | walsby_generate_regression_ETR_II |
| Walsby Model Modification | walsby_modified |
| Write Model Result CSV | write_model_result_csv |
